PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2519s0019.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 425aa    MW: 47333.4 Da    PI: 9.9797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2519s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-057395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Cagra.2519s0019.1.p 73 FFCEICSKGFQREQNLQLHKRGH 95
                         67******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.1E-77295No hitNo description
Gene3DG3DSA:3.30.160.605.0E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.8E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.7417395IPR007087Zinc finger, C2H2
SMARTSM003550.0197395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355120115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.1E-7145170No hitNo description
SMARTSM00355220150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNNQDMMIPH NDGRLSFSSF VHPQEHTTPN SNPNSKHAST NTPKKKRNLP GNPDPDAEVI  60
ALSPKSLMAT NRFFCEICSK GFQREQNLQL HKRGHNLPWK LKQRTNKNQV KKKVYICPEK  120
SCVHHDPTRA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VVSDWKAHNK ICGSREFRCD  180
CGTLFSRKDS FISHRSFCDV LAEESAKFFS VPSPLAANST ISTVADTNNP VLIQSQLDQS  240
LTCTADLNVN NNHSTLLGKK FINSEPIPQR ANAFAFSPPP TPRGTSDNSV HNLWKLQEKE  300
CSHQSLLNGY MNNNKNIIHK GISQNQENAI IKKGNIYSGS NSSDVNIASL FSYNQEAGNL  360
ASLSATTLLQ KVAQMGSSSR SDTSTLLGLM TSSIFNNRMP NSDCLKAKNK EEEWTRDFLG  420
VGKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280537.10.0hypothetical protein CARUB_v10026480mg
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLR0GM860.0R0GM86_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0008_25450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein